PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 425aa    MW: 48545 Da    PI: 7.9174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08992genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08352384135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      r +WT eE+   v+a++ +G++ W+ Ia+ ++ +R
         EMT08992 352 REAWTIEEEHAVVNAHRVYGNK-WAEIAKVLP-RR 384
                      789*******************.******999.65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.580.103.7E-884127IPR016142Citrate synthase-like, large alpha subdomain
PfamPF002853.5E-7236285IPR002020Citrate synthase
Gene3DG3DSA:1.10.230.105.9E-7246284IPR016143Citrate synthase-like, small alpha subdomain
SuperFamilySSF482563.01E-10247286IPR002020Citrate synthase
PROSITE patternPS004800251263IPR019810Citrate synthase active site
PROSITE profilePS500906.992347384IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-8351384IPR009057Homeodomain-like
SuperFamilySSF466894.45E-7351386IPR009057Homeodomain-like
PfamPF002498.5E-7352384IPR001005SANT/Myb domain
CDDcd001673.28E-4354384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006099Biological Processtricarboxylic acid cycle
GO:0003677Molecular FunctionDNA binding
GO:0046912Molecular Functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTRFPNRNFP VRLEHPVPIG GSQRPNLTWE ESVKRDLKDW SITKELAMDR GFEFGLRRWT  60
EAKAWYRLAD LDMSHLLFIV LLRTLNGLAG PLHGLANQVV VVREKFPELY ESEQQWLRAA  120
QMLSGIDLDS GIRLKQAFVS LYMSLDFLSP GNLTNFLKTR MLDDTNKLSK CVQIARLYLE  180
YDDAVNAEAF INKDSFLVTN SNQEVLNLQY KVCYVRILDL KRKFLEAALR YYGISQILSN  240
AKLGTMAVVP GYGHGVLRNT DPRYSCQREF TLKYLPEDPL FQLVQPCGSG HVTLALYCVA  300
KDTDGLGLHT MQMCCIHNYL LAPDICAQNA VWTDKMVSLQ GGCIGKQCQE KREAWTIEEE  360
HAVVNAHRVY GNKWAEIAKV LPRRFFSPIA KVKDDKPSEL LELQDTQNHR LAVLGSDERQ  420
PLLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4d0p_A5e-2184235112236COP9 SIGNALOSOME COMPLEX SUBUNIT 4
4d10_D5e-218423592216COP9 SIGNALOSOME COMPLEX SUBUNIT 4
4d10_L5e-218423592216COP9 SIGNALOSOME COMPLEX SUBUNIT 4
4d18_D5e-218423592216COP9 SIGNALOSOME COMPLEX SUBUNIT 4
4d18_L5e-218423592216COP9 SIGNALOSOME COMPLEX SUBUNIT 4
4wsn_b5e-218423592216COP9 signalosome complex subunit 4
4wsn_D5e-218423592216COP9 signalosome complex subunit 4
4wsn_j5e-218423592216COP9 signalosome complex subunit 4
4wsn_L5e-218423592216COP9 signalosome complex subunit 4
4wsn_r5e-218423592216COP9 signalosome complex subunit 4
4wsn_T5e-218423592216COP9 signalosome complex subunit 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504471e-120AK250447.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf79o07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8AWZ60.0M8AWZ6_AEGTA; Citrate synthase
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-13myb domain protein 3r-5